analysis-essentials | Tutorials on computing essentials for HEP | Learning library

 by   hsf-training Jupyter Notebook Version: Current License: Non-SPDX

kandi X-RAY | analysis-essentials Summary

kandi X-RAY | analysis-essentials Summary

analysis-essentials is a Jupyter Notebook library typically used in Tutorial, Learning applications. analysis-essentials has no bugs, it has no vulnerabilities and it has low support. However analysis-essentials has a Non-SPDX License. You can download it from GitHub.

This is the source material for the analysis essentials website, a series of lessons for helping high-energy physics analysts become more comfortable working with the shell, version control, and programming. The lessons introduce the basics of the bash shell, the git version control system, and the Python programming language. They are developed for and taught during the Starterkit, and aim to teach students enough to be able to follow the experiment-specific lessons that are taught afterwards. Contributions to the lessons are highly encouraged. Please see the contributing guide for details on how to participate.
Support
    Quality
      Security
        License
          Reuse

            kandi-support Support

              analysis-essentials has a low active ecosystem.
              It has 35 star(s) with 36 fork(s). There are 3 watchers for this library.
              OutlinedDot
              It had no major release in the last 6 months.
              There are 3 open issues and 7 have been closed. On average issues are closed in 353 days. There are 3 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of analysis-essentials is current.

            kandi-Quality Quality

              analysis-essentials has 0 bugs and 0 code smells.

            kandi-Security Security

              analysis-essentials has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              analysis-essentials code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              analysis-essentials has a Non-SPDX License.
              Non-SPDX licenses can be open source with a non SPDX compliant license, or non open source licenses, and you need to review them closely before use.

            kandi-Reuse Reuse

              analysis-essentials releases are not available. You will need to build from source code and install.
              Installation instructions are not available. Examples and code snippets are available.
              It has 72 lines of code, 1 functions and 108 files.
              It has low code complexity. Code complexity directly impacts maintainability of the code.

            Top functions reviewed by kandi - BETA

            kandi's functional review helps you automatically verify the functionalities of the libraries and avoid rework.
            Currently covering the most popular Java, JavaScript and Python libraries. See a Sample of analysis-essentials
            Get all kandi verified functions for this library.

            analysis-essentials Key Features

            No Key Features are available at this moment for analysis-essentials.

            analysis-essentials Examples and Code Snippets

            No Code Snippets are available at this moment for analysis-essentials.

            Community Discussions

            Trending Discussions on analysis-essentials

            QUESTION

            PCA : eigen values vs eigen vectors vs loadings in python vs R?
            Asked 2021-May-10 at 09:44

            I am trying to calculate PCA loadings of a dataset. The more I read about it, the more I get confused because "loadings" is used differently at many places.

            I am using sklearn.decomposition in python for PCA analysis as well as R (using factomineR and factoextra libraries) as it provides easy visualization techniques. The following is my understanding:

            1. pca.components_ give us the eigen vectors. They give us the directions of maximum variation.
            2. pca.explained_variance_ give us the eigen values associated with the eigen vectors.
            3. eigenvectors * sqrt(eigen values) = loadings which tell us how principal components (pc's) load the variables.

            Now, what I am confused by is:

            1. Many forums say that eigen vectors are the loadings. Then, when we multiply the eigen vectors by the sqrt(eigen values) we just get the strength of association. Others say eigenvectors * sqrt(eigen values) = loadings.

            2. Eigen vectors squared tells us the contribution of variable to pc? I believe this is equivalent to var$contrib in R.

            3. loading squared (eigen vector or eigenvector*sqrt(eigenvalue) I don't know which one) shows how well a pc captures a variable (closer to 1 = variable better explained by a pc). Is this equivalent of var$cos2 in R? If not what is cos2 in R?

            4. Basically I want to know how to understand how well a principal component captures a variable and what is the contribution of a variable to a pc. I think they both are different.

            5. What is pca.singular_values_? It is not clear from the documentation.

            These first and second links that I referred which contains R code with explanation and the statsexchange forum that confused me.

            ...

            ANSWER

            Answered 2021-May-09 at 11:37

            Okay, after much research and going through many papers I have the following,

            1. pca.components_ = eigen vectors. Take a transpose so that pc's are columns and variables are rows.

            1.a: eigenvector**2 = variable contribution in principal components. If it's close to 1 then a particular pc is well explained by that variable.

            In python -> (pow(pca.components_.T),2) [Multiply with 100 if you want percentages and not proportions] [R equivalent -> var$contrib]

            1. pca.variance_explained_ = eigen values

            2. pca.singular_values_ = singular values obtained from SVD. (singular values)**2/(n-1) = eigen values

            3. eigen vectors * sqrt(eigen values) = loadings matrix

            4.a: vertical sum of squared loading matrix = eigen values. (Given you have taken transpose as explained in step 1)

            4.b: horizontal sum of squared loading matrix = observation's variance explained by all principal components -How much all pc's retain a variables variance after transformation. (Given you have taken transpose as explained in step 1)

            In python-> loading matrix = pca.components_.T * sqrt(pca.explained_variance_).

            For questions pertaining to r:

            var$cos2 = var$cor (Both matrices are same). Given the coordinates of the variables on a factor map, how well it is represented by a particular principal component. Seems like variable and principal component's correlation.

            var$contrib = Summarized by point 1. In r:(var.cos2 * 100) / (total cos2 of the component) PCA analysis in R link

            Hope it helps others who are confused by PCA analysis.

            Huge thanks to -- https://stats.stackexchange.com/questions/143905/loadings-vs-eigenvectors-in-pca-when-to-use-one-or-another

            Source https://stackoverflow.com/questions/67445786

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install analysis-essentials

            You can download it from GitHub.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
            Find more information at:

            Find, review, and download reusable Libraries, Code Snippets, Cloud APIs from over 650 million Knowledge Items

            Find more libraries
            CLONE
          • HTTPS

            https://github.com/hsf-training/analysis-essentials.git

          • CLI

            gh repo clone hsf-training/analysis-essentials

          • sshUrl

            git@github.com:hsf-training/analysis-essentials.git

          • Stay Updated

            Subscribe to our newsletter for trending solutions and developer bootcamps

            Agree to Sign up and Terms & Conditions

            Share this Page

            share link